Amino Acid
Advertisement
Rate4Site v.2.01
Rate4Site is a software for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA).The rate of evolution is not constant among amino acid sites:
Advertisement
Seq-Gen v.1.3.2
Seq-Gen is a software that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process.
ProSAT (PROtein reSidue Annotation Toolkit) v.1.0
PROtein reSidue Annotation Toolkit. ProSAT toolkit is a set of programs that allow building SVM based models for annotating amino acid residues in protein sequences using user supplied features (like PSI-BLAST profiles, or PSIPred profiles).
IQPNNI - Important Quartet Puzzling and NNI Operation v.3.3.2
Important Quartet Puzzling and NNI Operation. An efficient tree reconstruction method (IQPNNI) is introduced to reconstruct a phylogenetic tree based on DNA or amino acid sequence data.
FASTML v.2.02
FASTML is a software for computing the ancestral amino-acid sequences of a phylogenetic tree.FASTML uses flags in the command line arguments: -For help, type "fastml.exe -h" -s seq.aln = the sequence input file name. -t tree.txt = the input tree file
Simprot v.1.01
Protein evolution has been largely modeled by considering the amino acid substitution process; however there have been few studies of the process of insertion and deletion. Simprot allows for several models of amino acid substitution (PAM, JTT and
Leaphy v.1.0 Beta
Likelihood estimation algorithms in phylogenetics. Leaphy uses maximum likelihood (ML) to estimate trees from aligned amino acid and nucleotide sequences under a variety of commonly used and popular models.The 1.
McRate v.1.0
Calculate relative evolutionary rate with the help of this tool. McRate is a software for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA).
Iso2l v.2.0
iso2l is a utility to calculate the isotopic distribution of a chemical formula or a amino acid chain. Java based isotopic distribution calculator.Requirements: *
BiOpen v.2.3
biOpen is a new and unique DNA and protein sequence analysis and structure visualization software based on dynamic integration of analysis tools.
Protein Molar Converter Widget v.1.1
The Protein Molar Converter widget is a Dashboard widget that allows to perform molar conversions for proteins according to size.